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Working With Linux

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Guide to Linux to replace the outdated guide at clusters.engineering.wustl.edu


  1. Getting Started With Linux
    1. Why Linux
    2.  Purpose of this guide
    3. SSH to Linuxlab
    4. OOD Getting to Terminal
    5. WSL
    6. Installing VM
  2. Bash Shell Basics
    1. Navigating the Directory
    2. Move edit and create files
    3. Text Editing
    4. Pipes and Redirections
    5. tar / zip
    6. Basic Scripting
    7. LSF Script Example
  3. Workflow (How to Use the Shell Environment)
    1. tmux
    2. processes (ps / kill / top / free )
    3. Space / Storage (df du)
    4. man / resources
    5. wget / curl
    6. lynx
    7. scp / ftp
  4. Users and Permissions
    1. Whoami
    2. useradd / usermod
    3. passwd
    4. sudo
    5. chmod / chown
  5. Packages
    1. Package Managers
    2. Creating a Package
    3. Flatpak
  6. Filesystem
    1. Root Directory Structure
    2. Filesystem types
  7. Compilers
    1. GCC / CMAKE
    2. python
    3. r
  8. Python on Linux
    1. Virtenv
    2. Dealing with Filesystem
    3. Pip
  9. Cuda
  10. Docker / Singularity
    1. Intro
    2. Installation
    3. Singularity Examples
    4. Singularity and LSF
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