Found here is the documentation for the workshops on using the RIS Compute environment.
Previous RIS WorkshopsAnchor id2 id2
Workshop documentationAnchor id3 id3
This page contains all the workshop documentation and previous workshops given by RIS.
Previous RIS Workshops
- RIS Compute Seminars from September Fall 2021
- The Unix Shell and Command Line Basics
- Software Applications Needed to Work in HPC Environments Basics of Submitting Job tasks to the RIS Scientific Compute Platform
- Single-cell RNA sequencing data analysis using R RIS Compute Seminars from April 2020
- Introduction to RIS
- Working With RIS And Getting Started
- Working With Your Storage Allocation
- Intro to RIS Computing For Traditional HPC Users
- Intro To Computing 101
- Intro To Computing 102
- Intro To Computing 103 And 104
- Introduction To Docker Intro To Python In Docker
- NVIDIA Workshop - September 2020
- Quick Start
- RIS Compute 101
- RIS Compute 102
- RIS Compute 103
- RIS Compute 104
- RIS Docker Workshop Docker
Workshop documentation
The following are links to each of the workshops and the documentation we have for them.
- RIS Compute 101
- RIS Compute 102
- RIS Compute 103
- RIS Compute 104
- RIS Docker Workshop
- Docker Basics: Building, Tagging, & Pushing A Custom Docker Image
- In this tutorial we’re going to create a custom docker container with Python3, R, and Git
- Prerequisites
- Workshop Video
- Step By Step Instructions
- RIS Open On Demand
- Installing Python Packages In Your Docker Container Workshop Video
- pip (and a Linux package manger) vs anaconda
- Case Study: Spacy RIS R Workshop R Workshop Video What will this documentation provide?
- What is needed?
- Available R Docker Images
- Getting Started
- Adding Packages to the Docker Image
- Using the R Docker Image
- Analysis Setup
- DESeq2 Analysis
- Further Analysis
- Visualization
- Running an R-script
- RIS Software Development Workshop Software Development Workshop Video
- What will this documentation provide?
- What is needed?
- Getting Started
- Bringing It All Together
- Setting Up Our Environment
- Creating a Repository
- Finding a Docker Image
- Creating Our Docker Image
- Creating Our Perl Script Additional information