Blog from June, 2017

Scheduled Outage of Some Storage Volumes
Former user posted on Jun 22, 2017

June 30 outage of aggr14

/wiki/spaces/IT/pages/180463923

Some time ago, we discovered data corruption within some parts of the aggr14 filesystem. In order to repair the corruption, we must take the filesystem off line to run a filesystem check. We are planning to perform this maintenance beginning June 30.

Users may not recognize the name "aggr14", but you probably know what /gscmnt/* filesystem paths are important to you. See the list of affected volumes below.

  • We will be unmounting only aggr14 and its volumes for this repair.
  • The volumes will remain offline until July 5.
  • The list of affected volumes is included below.
  • While the list looks long, much of the data is old and unused.
  • If you are concerned about this outage, please reach out to us via the Service Desk and Ask a question about the storage management service

Details of the outage can be tracked here:  ITDEV-3403 - Getting issue details... STATUS

Affected volumes

 

/gscmnt/411
/gscmnt/442
/gscmnt/gc1400
/gscmnt/gc1401
/gscmnt/gc1402
/gscmnt/gc1403
/gscmnt/gc1404
/gscmnt/gc2000
/gscmnt/gc2001
/gscmnt/gc2002
/gscmnt/gc2003
/gscmnt/gc2004
/gscmnt/gc2005
/gscmnt/gc2006
/gscmnt/gc2007
/gscmnt/gc2008
/gscmnt/gc2009
/gscmnt/gc2010
/gscmnt/gc2011
/gscmnt/gc2012
/gscmnt/gc2013
/gscmnt/gc2014
/gscmnt/gc2015
/gscmnt/gc2016
/gscmnt/gc2709
/gscmnt/gc2721
/gscmnt/gc2722
/gscmnt/gc3011
/gscmnt/gc3019
/gscmnt/gc3031
/gscmnt/gc4000
/gscmnt/gc4001
/gscmnt/gc4002
/gscmnt/gc4003
/gscmnt/gc4004
/gscmnt/gc4005
/gscmnt/gc4006
/gscmnt/gc4007
/gscmnt/gc4008
/gscmnt/gc4009
/gscmnt/gc4010
/gscmnt/gc4011
/gscmnt/gc4012
/gscmnt/gc4013
/gscmnt/gc4014
/gscmnt/gc4015
/gscmnt/gc4016
/gscmnt/gc4017
/gscmnt/gc4018
/gscmnt/gc4020
/gscmnt/gc4021
/gscmnt/gc4022
/gscmnt/gc4023
/gscmnt/gc4024
/gscmnt/gc4025
/gscmnt/gc4026
/gscmnt/gc4027
/gscmnt/gc4028
/gscmnt/gc4029
/gscmnt/gc4030
/gscmnt/gc4031
/gscmnt/gc4032
/gscmnt/gc4033
/gscmnt/gc4034
/gscmnt/gc4035
/gscmnt/gc4036
/gscmnt/gc4037
/gscmnt/gc4038
/gscmnt/gc4039
/gscmnt/gc4040
/gscmnt/gc4041
/gscmnt/gc4042
/gscmnt/gc4043
/gscmnt/gc4044
/gscmnt/gc4045
/gscmnt/gc4046
/gscmnt/gc4047
/gscmnt/gc4048
/gscmnt/gc4049
/gscmnt/gc4050
/gscmnt/gc4051
/gscmnt/gc4052
/gscmnt/gc4053
/gscmnt/gc4054
/gscmnt/gc4055
/gscmnt/gc4056
/gscmnt/gc4057
/gscmnt/gc4058
/gscmnt/gc4059
/gscmnt/gc4060
/gscmnt/gc4061
/gscmnt/gc4062
/gscmnt/gc4063
/gscmnt/gc4064
/gscmnt/gc4065
/gscmnt/gc4066
/gscmnt/gc4067
/gscmnt/gc4068
/gscmnt/gc4069
/gscmnt/gc4070
/gscmnt/gc4071
/gscmnt/gc4072
/gscmnt/gc4073
/gscmnt/gc4074
/gscmnt/gc4075
/gscmnt/gc4076
/gscmnt/gc4077
/gscmnt/gc4078
/gscmnt/gc4079
/gscmnt/gc4080
/gscmnt/gc4081
/gscmnt/gc4082
/gscmnt/gc4083
/gscmnt/gc4084
/gscmnt/gc4085
/gscmnt/gc4086
/gscmnt/gc4087
/gscmnt/gc4088
/gscmnt/gc4089
/gscmnt/gc4090
/gscmnt/gc4091
/gscmnt/gc4092
/gscmnt/gc4093
/gscmnt/gc4094
/gscmnt/gc4095
/gscmnt/gc4096
/gscmnt/gc5100
/gscmnt/gc5110
/gscmnt/gc6106
/gscmnt/gc6117
/gscmnt/gc6152
/gscmnt/gc7000
/gscmnt/gc7001
/gscmnt/gc7002
/gscmnt/gc7003
/gscmnt/gc7004
/gscmnt/gc7005
/gscmnt/gc7006
/gscmnt/gc7007
/gscmnt/gc7008
/gscmnt/gc9000
/gscmnt/gc9001
/gscmnt/gc9002
/gscmnt/gc9003
/gscmnt/gc9004
/gscmnt/gc9005
/gscmnt/gc9006
/gscmnt/gc9007
/gscmnt/gc9008
/gscmnt/gc9010
/gscmnt/gc9011
/gscmnt/gc9012
/gscmnt/gc9014
/gscmnt/gc9015
/gscmnt/gc9016
/gscmnt/gc9017
/gscmnt/gc9018
/gscmnt/gc9019
/gscmnt/gc9020
/gscmnt/gc9021
/gscmnt/gc9022
/gscmnt/gc9023
/gscmnt/gc9024
/gscmnt/gc9025
/gscmnt/gc9026
/gscmnt/sata100
/gscmnt/sata102
/gscmnt/sata107
/gscmnt/sata198
/gscmnt/sata199
/gscmnt/sata205
/gscmnt/sata400
/gscmnt/sata408
/gscmnt/sata416
/gscmnt/sata417
/gscmnt/sata418
/gscmnt/sata425
/gscmnt/sata426
/gscmnt/sata427
/gscmnt/sata430
/gscmnt/sata431
/gscmnt/sata432
/gscmnt/sata433
/gscmnt/sata434
/gscmnt/sata810
/gscmnt/sata820
/gscmnt/sata821
/gscmnt/sata828
/gscmnt/sata830
/gscmnt/sata834
/gscmnt/sata835
/gscmnt/sata838
/gscmnt/sata840
/gscmnt/sata844
/gscmnt/sata845
/gscmnt/sata846
/gscmnt/sata847
/gscmnt/sata848
/gscmnt/sata849
/gscmnt/sata856
/gscmnt/sata859
/gscmnt/sata860
/gscmnt/sata863
/gscmnt/sata864
/gscmnt/sata865
/gscmnt/sata866
/gscmnt/sata867
/gscmnt/sata870
/gscmnt/sata871
/gscmnt/sata873
/gscmnt/sata874
/gscmnt/sata875
/gscmnt/sata876
/gscmnt/sata877
/gscmnt/sata878
/gscmnt/sata882
/gscmnt/sata883
/gscmnt/sata888
/gscmnt/sata889
/gscmnt/sata890
/gscmnt/sata891
/gscmnt/sata896
/gscmnt/sata897
/gscmnt/sata902
/gscmnt/sata903
/gscmnt/sata904
/gscmnt/sata905
/gscmnt/sata906
/gscmnt/sata908
/gscmnt/sata909
/gscmnt/sata912
/gscmnt/sata913
/gscmnt/sata914
/gscmnt/sata918
/gscmnt/sata919
/gscmnt/sata920
/gscmnt/temp233

 

 

Cleanup of Legacy LIMS Code
Former user posted on Jun 16, 2017

In preparation for migrating our database from Oracle to Postgres, the AppDev team is undergoing a widespread cleanup of old code and unused database tables. This cleanup will reduce the total size of our database and make the migration much easier. All aspects of this cleanup have been vetted by members of AppDev, and are not expected to affect anyone's current daily work. This cleanup is scheduled to occur early next week, and we will be watching closely for any unexpected fallout. The broad categories for which we are removing code include:

  • mp_grande and primer design
  • Code / tables related to oligo ordering
  • The concept of creating "validation" work orders (i.e. work orders created specifically for primer design, not for sequencing). The old work orders will continue to exist, but will not be displayed specially by the code any longer.
  • The concept of "importing" sequence tags (i.e. gene annotations from ensembl, genbank, etc). We are no longer supporting the tables where this data used to be stored.
  • 3730 sequencing
  • 454 sequencing
  • Support for 'pooling' of capture probes (i.e. merging BED files). Please see (/wiki/spaces/IT/pages/180466677) for information about how to use GMS for these needs.

As always, please place a service desk ticket if you have any questions or notice anything unusual as a result of this cleanup.