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Compute1

Compute1

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This is the documentation for using the Compute1 Platform. This documentation is focused on the resources contained there and using the LSF job scheduler.

Getting Started

https://washu.atlassian.net/wiki/spaces/RUD/pages/1683489040/Compute1+Quick+Start?atlOrigin=eyJpIjoiZTUxMjQ3OGU1ZmViNGExZDhkOWRkNDYzN2I5YTFhZmEiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1705803819/Open+OnDemand?atlOrigin=eyJpIjoiNDkxNjU3NTRmNzUxNDViNmJiZGU4YzY1ZDk5OWY5MjciLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1696039041/THPC+Installed+Applications?atlOrigin=eyJpIjoiN2RjYjg5NWJkNWY0NDUwOTgzZTc4MWVmYTgyNzllZDAiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1705738300/RIS+Developed+Containers?atlOrigin=eyJpIjoiMTc1ZTBmODhjMzlkNDViYjkzNjE4NmJkNTdmZjkyOWUiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1861451878/Non-RIS+Docker+Images?atlOrigin=eyJpIjoiOGRkYWJjYjFkOWJmNDYxZDhlM2FlYjZlYmEyNDczODIiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1785757987/RTM?atlOrigin=eyJpIjoiOWRhNmUwNTVhMTcyNDc5MGFiZTAyODEzNWQ0ZDRkZGEiLCJwIjoiYyJ9

Tutorials

https://washu.atlassian.net/wiki/spaces/RUD/pages/1865285780/Docker+Tutorial?atlOrigin=eyJpIjoiMDBiMTVkNDlhMmE4NGQ4MWFiYmQzOTk4YThiMWQyODgiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1867743312/R+Tutorial?atlOrigin=eyJpIjoiMDg5ZGU4ODdhOTViNDcyNWIzMzIwNDE0MjBhNzk4MGMiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1786937372/Software+Development+Using+Compute1?atlOrigin=eyJpIjoiNDVhZDk1ZjY5YmZkNGVmZjk2Mjk1MDkwZDRjNTY4OTIiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1793949820/Create+Custom+Conda+Environment?atlOrigin=eyJpIjoiMjljMjExYjA3ZmI1NDE2YWE3ODU2Y2UyMzA1MzYwOWQiLCJwIjoiYyJ9

Docker

https://washu.atlassian.net/wiki/spaces/RUD/pages/1705115761/Docker+and+the+RIS+Compute1+Platform?atlOrigin=eyJpIjoiOTUyMzk3YmNiYzhjNDZlYzg3OWE0ZjE3ZTA3ZjQwMDQiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1864892726/Docker+Basics+Building+Tagging+Pushing+A+Custom+Docker+Image?atlOrigin=eyJpIjoiOWE1MWE2ZGIyYzdkNDc2MWE2MTcyZmNlY2Q0MGYwNjIiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1866072140/Installing+Python+Packages+In+Your+Docker+Container?atlOrigin=eyJpIjoiMjhjZjA1MGQ3NGNmNDZiYjgzMmIzNmE3M2ZjMGZhZTgiLCJwIjoiYyJ9

Advanced Topics

https://washu.atlassian.net/wiki/spaces/RUD/pages/1705182249/Job+Execution+Examples?atlOrigin=eyJpIjoiZjI3ZjcxMGZiZGQ4NDlmOWI2Mzk4YTZkZDk5ZDZjZTUiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1704984661/Docker+Wrapper+Environment+Variables?atlOrigin=eyJpIjoiZDQxZDIzY2U0Njk4NGQxNjhhNWQwZjFlMjcyZWU3ZTIiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1704886361/Compute1+Condo+and+Subscription+Queues?atlOrigin=eyJpIjoiZWE1M2U3MzUwNDc2NGQyNzhhZjdiZGMyNzQ5ZTdkMzkiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1705771082/Parallel+Computing?atlOrigin=eyJpIjoiMWUyZDYwMDc1MmMxNGJhZDgxNGViMzhlNmNlY2UyZWUiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1786478674/Port+Forwarding?atlOrigin=eyJpIjoiNmI5YWQxN2FmODhmNDcyYzkxMGYzOGI1OGUyNTVkOGMiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1794834439/Using+OFED+in+Docker+Images?atlOrigin=eyJpIjoiMjZlNjU2NTM4OTNiNDE0NWFhOWE5ZjkwNjE5NDJjNDUiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1794736152/Using+CUDA+in+Docker+Images?atlOrigin=eyJpIjoiMGU1NmI5MWQxMjk2NGJiNThjOTEyZjE1NGI3YTE5MjEiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1793949810/Intel+Compiler+Base+Tutorial?atlOrigin=eyJpIjoiNTlhMDIyYjFjMzlkNDIwZDhkY2YyMzEyYjIzNzhkNjciLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1794965573/Access+Storage+Volumes?atlOrigin=eyJpIjoiODYxMDhjYTRmMmNlNGI4NDlmYTRkNGYwMjY1MDU5NTgiLCJwIjoiYyJ9

https://washu.atlassian.net/wiki/spaces/RUD/pages/1844445524/Space+Management?atlOrigin=eyJpIjoiMzk1MjcxMzY2MTM0NDZhN2I3MjFlNDNlMDBmMDJhZGIiLCJwIjoiYyJ9