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Info
iconfalse
titleCompute Resources

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ris-rstudio-docker
ris-rstudio-docker

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iconfalse
titleDocker Usage

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R installs a default set of packages during installation. The list of installed packages can be viewed in the lower right pane of RStudio, with currently active packages indicated with a checkmark.

Image Modified

If you wish to install additional packages, you can do so by first creating a file in your home directory called .Rprofile, if it doesn’t already exist. This file will be loaded automatically when RStudio starts.

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Code Block
languagepython
linenumbersfalse
export PASSWORD=password
export LSF_DOCKER_PORTS='8080:8080'
export LSF_DOCKER_VOLUMES="/storage1/fs1/${STORAGE_ALLOCATION}/Active:/storage1/fs1/${STORAGE_ALLOCATION}/Active"
bsub -Is -R 'select[port8080=1]' -q general-interactive -a 'docker(ghcr.io/washu-it-ris/rstudio:<tag>)' supervisord -c /app/supervisord.conf

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rstudio-docker-tag
rstudio-docker-tag

Info
iconfalse
titleRStudio Docker Tag

The <tag> will refer to the version of RStudio in the Docker container. Please click here to see a current list of available RStudio versions and their corresponding Docker images.

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You should now see the RStudio GUI

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Info

You can safely ignore XDG_RUNTIME_DIR and Session version X does not match server version X warnings that may appear when starting RStudio.

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  • ghcr.io/washu-it-ris/rstudio

    • 4.34.0

Earlier Versions:

Earlier versions are still available but no longer directly supported by RIS. Please refer to the latest version for direct support.

  • ghcr.io/washu-it-ris/rstudio
    • 4.3.0
  • gcr.io/ris-registry-shared/rstudio

    • 4.2.3

    • 4.2.2

    • 4.1.2

    • 4.1.2_seurat_4.1.1

    • 4.0.0

    • 3.6.3