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BioMS 1.0 Setup and Admin Guide

1. Purpose


This document is meant for the administrators of the BioMS application. This document describes the process of deploying the BioMS application and regular administration activities to be performed on the BioMS application.

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  1. Edit JBOSS_HOME/server/bioms-node1/congconf/login-config.xml and update the database connection details under the application-policy element with name 'bms' to point to the BioMS database schema.
  2. Copy BIOMS_INSTALL_HOME/.bioms to users home folder ($HOME)
  3. Edit $HOME/.bioms/ApplicationSecurityConfig.xml and replace ${user.home} with the home directory path of the user.
  4. Edit $HOME/.bioms/bioms-config.groovy, and update the datasource section with the database connection details for the BioMS database schema.
  5. Start the JBoss Server bioms-bioms-node1

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 # Define list of workers that will be used
# for mapping requests
worker.list=loadbalancer,status

# Define Bioms-node1
# modify the host as your host IP or DNS name.
worker.bioms-bioms-node1.port=8009
worker.bioms-node1.host=<bioms-node1-host>
worker.bioms-node1.type=ajp13
worker.bioms-node1.lbfactor=1
worker.bioms-node1.cachesize=10

# Define Bioms-node2
# modify the host as your host IP or DNS name.
worker.bioms-node2.port=8009
worker.bioms-node2.host=<bioms-node2-host>
worker.bioms-node2.type=ajp13
worker.bioms-node2.lbfactor=1
worker.bioms-node2.cachesize=10

# Load-balancing behaviour
worker.loadbalancer.type=lb
worker.loadbalancer.balance_workers=bioms-node1,bioms-node2
worker.loadbalancer.sticky_session=1
#worker.list=loadbalancer

# Status worker for managing load balancer
worker.status.type=status

 - add laodbalancer worker urls

9. CTEP Authentication Setup

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