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1. Purpose
This document is meant for the administrators of the BioMS application. This document describes the process of deploying the BioMS application and regular administration activities to be performed on the BioMS application.
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Get the caTissue 2.0A installer from filesfrom sftp://files.cbmi.wucon.wustl.edu:/files/bioms/1.0/RC1final/caTISSUE_Suite_v2.0_Installable.zip and unpack it on caTissue2.0A on BioMS server. Follow the caTissue 2.0 installation instruction to install caTissue to the BioMS Oracle DB.
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# Define list of workers that will be used
# for mapping requests
worker.list=loadbalancer,status
# Define Bioms-node1
# modify the host as your host IP or DNS name.
worker.bioms-node1.port=8009
worker.bioms-node1.host=<bioms-node1-host>
worker.bioms-node1.type=ajp13
worker.bioms-node1.lbfactor=1
worker.bioms-node1.cachesize=10
# Define Bioms-node2
# modify the host as your host IP or DNS name.
worker.bioms-node2.port=8009
worker.bioms-node2.host=<bioms-node2-host>
worker.bioms-node2.type=ajp13
worker.bioms-node2.lbfactor=1
worker.bioms-node2.cachesize=10
# Load-balancing behaviour
worker.loadbalancer.type=lb
worker.loadbalancer.balance_workers=bioms-node1,bioms-node2
worker.loadbalancer.sticky_session=1
# Status worker for managing load balancer
worker.status.type=status
Configure the worker uri map in Apache load balancer.Add the following uriworkermap.properties file in apache config
/bioms=loadbalancer
/bioms/*=loadbalancer
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- Assign a unique name for the repository (<repo-name>)caTissue instance. E.g pco-repo.
- Assign a secret authorization key (<authkey>) for the repository
- Identify people who need to be informed when this repository connection to bioms breaks and the comma separated list of the emails of these people need to be set in the COTACT column should below (<contact_emails>), e.g. admin@bioms.com, admin@pco.com
Add new row to the BMS_REMOTE_REPOSITORY table in the BioMS database with the following data.
ID | NAME | JMS_QUEUE_NAME | AUTHKEY | STATUS | CONTACT | |
1 (max (id) +1) | <repo-name> | <repo-name> | <authkey> | 1 | <contact_emails> |
Securely share the <repo-name> and <authkey> and the bioms application url (the loadbalancer url) with the repository caTissue admin. They would need to update the bioms-adaptor.properties with these details.
Once the bioms-adaptor is setup properly at the repository caTissue and started you should see message like
controller.RepoSyncMessageController 2012-10-08 09:59:11,996 Sending 204 (no message available) to repo <repo-name>
in the bioms log.
Also messages like the following would be there on the BioMS adaptor log file.
5:01:14,745 INFO [STDOUT] 2012-10-08 15:01:14 SyncMessageReceiver [DEBUG] No mssage received, sleep for 10sec before trying again...
13.2. Setup a new Repository Site
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Once the repository caTissue instance is linked with BioMS as described above the follow the steps below to setup a new Repository Site for sync. A single caTissue instance can host multiple independent repository sites and BioMS can handle that.
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